In conclusion, our results indicate that dietary addition of NCG with 20 (g/d/head) can regulate index associated with altitude stress such as thyroxine, transferrin, and endothelin in lactating Jersey cattle at high altitude, and is conducive to the improvement of blood oxygen saturation, thus alleviating the hypoxia stress state of Jersey cattle. The addition of NCG does not affect the nutrient digestion and immunity, but it tends to increase milk fat and affects the rumen fermentation parameters and causes butyric acid to decrease tendency. Analysis of 114 differential metabolites identified from plasma samples and feces samples showed that these changes were mainly reflected in amino acid metabolism and lipid metabolism. These data suggest that NCG is still beneficial to the improvement of physiological state and production performance of Jersey cattle at high-altitude areas, which provide theoretical basis for NCG to prevent altitude sickness and regulate nutritional physiology of dairy cows. However, the additive dosage needs to further consider the impact of environmental factors and interspecies differences.